PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000188G0980
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 306aa    MW: 32582.8 Da    PI: 7.0549
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000188G0980genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.3e-202776255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      y+GVr++  +g+WvAeIr+p   +kr+r +lg+f taeeAa a+++a+++l+g
  PH01000188G0980 27 EYRGVRQRT-WGKWVAEIREP---NKRTRLWLGSFATAEEAALAYDEAARRLYG 76
                     69****999.**********9...337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.60E-282686No hitNo description
PfamPF008476.5E-142776IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-212785IPR016177DNA-binding domain
PROSITE profilePS5103222.3262784IPR001471AP2/ERF domain
SMARTSM003801.3E-362790IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-302785IPR001471AP2/ERF domain
PRINTSPR003672.9E-102839IPR001471AP2/ERF domain
PRINTSPR003672.9E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MESYGRKRAW KKGPTRGKGG PQNAACEYRG VRQRTWGKWV AEIREPNKRT RLWLGSFATA  60
EEAALAYDEA ARRLYGPSAF LNLPHLRAAS AATAHQRLRW LPASTRGAVA AVPAYGLLNL  120
NAQHNVHVIH QRLQELKNSS SPTKPPRTPP PPPARAHLPL LPSTSPCSTV TTNAPASAAL  180
PPPMSCFHAL EQAMSAVDSA PCDAAAGVGV DKPQLDLKEF LQQIGVLKAD EDGAAGKEDI  240
HGDGEVADAF GFCGNGEFDW DALAADMSGI AGGHGGAVGI NGGFQMDELH EVDQFGYMPI  300
PIWDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-172884663ATERF1
3gcc_A7e-172884663ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126111e-171CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985522.11e-141PREDICTED: dehydration-responsive element-binding protein 2E
SwissprotQ10R181e-143DRE2E_ORYSJ; Dehydration-responsive element-binding protein 2E
TrEMBLA0A0E0K9F41e-153A0A0E0K9F4_ORYPU; Uncharacterized protein
STRINGBGIOSGA011963-PA1e-141(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95752939
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.13e-49ERF family protein